Category Archive: Cloud Computing

Aug 30

Towards a Cancer Research Data Commons

By Allen Dearry, Ph.D., Program Director I recently joined NCI to help support strategic data sharing and informatics projects within the Center for Biomedical Informatics and Information Technology (CBIIT). Having worked on information management at another Institute for five years and the trans-NIH Big Data to Knowledge (BD2K) initiative since its inception, this is an …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/towards-cancer-research-data-commons/

Mar 07

Democratizing Access to CCG Data: Cancer Genomics Cloud Pilots

By Izumi Hinkson, Ph.D., NCI CBIIT Cancer Informatics Branch In recent years, genomics has been described as a big data science on par with the likes of Twitter, YouTube, and the scientific pursuit of understanding the universe1. These comparisons are certainly not exaggerations, especially considering that genomic data is generated at a rate of 1 zetta-bases …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/democratizing-access-ccg-data-cancer-genomics-cloud-pilots/

Nov 29

Precision Medicine Inspires HPC

By Eric Stahlberg, Ph.D., Director, High Performance Computing Initiative, Data Science and Information Technology Program, Frederick National Laboratory for Cancer Research (FNLCR) The recent weeks have been momentous as the high-performance computing (HPC) community embraced the challenge of precision medicine.  The theme of this year’s leading international supercomputing conference, SC16,  was “HPC Matters” and it …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/precision-medicine-inspires-hpc/

Aug 29

Cancer Genomics Cloud Pilots DREAM Challenge — Leveraging the Wisdom of the Crowd

By Tony Kerlavage, Ph.D., NCI CBIIT, Cancer Informatics Branch In recent years, Challenges have become a popular way to engage and motivate the research and innovation communities to solve difficult problems. Challenges are open competitions where communities are presented with specific and often difficult problems to solve. Participants are given guidelines and test data, and …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/cancer-genomics-cloud-pilots-dream-challenge-leveraging-wisdom-crowd/

Jul 20

Cancer Data and Computation in the Cloud: One Path to Affordable Genomics Research

By Gad Getz, Ph.D., Broad Institute / MGH The cost of DNA sequencing has dropped more than one million-fold over the last decade, making it increasingly possible to discover the genetic basis of cancer and response to treatment. Three challenges, however, impede this goal: 1) Analysts lack the resources to download, store and compute on …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/cancer-data-computation-cloud-one-path-affordable-genomics-research/

May 11

Collaborating Against Cancer: Inter-Agency Pilots

“We are on the cusp of breakthroughs that will save lives, benefit all of humanity. But we have to work together.” Vice President Joe Biden’s words at the American Association for Cancer Research conference resonate as a clear call to action. When we collaborate and share our expertise, the cancer informatics community can bring a …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/collaborating-cancer-inter-agency-pilots/

May 06

Usable, Collaborative, Reproducible, and Extensible: Four Key Tenets of Cloud Computing

The Seven Bridges Cancer Genomics Cloud (CGC) is one of three pilot systems funded by the National Cancer Institute with the aim of co-localizing massive genomics datasets, like The Cancer Genomics Atlas (TCGA), alongside secure and scalable computational resources for analysis. TCGA comprises multidimensional matched tumor-normal data from over 11,000 patients and 33 cancer types. …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/usable-collaborative-reproducible-extensible-four-key-tenets-cloud-computing/

Feb 29

Informatics Community Crucial to the Cancer Moonshot

There has been a lot of press in the past couple of months about the “Cancer Moonshot,” first mentioned by Vice President Joe Biden in October 2015, and gaining steam recently with the President’s State of the Union address and an initial recommendation of $1 billion of funding. The White House released a Fact Sheet …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/title-informatics-community-a-crucial-component-of-cancer-moonshot/

Feb 01

Cancer Research in the Cloud: The New Normal?

By Ilya Shmulevich, Ph.D., Institute for Systems for Biology   We have all been hearing about the benefits of cloud computing for a long time now. At the Institute for Systems Biology (ISB), we believe that 2016 is the year in which a cloud-based approach will truly become “the new normal” for cancer research.  The …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/cancer-research-in-the-cloud-the-new-normal/

Jan 06

FY 2017: NCI Looks to the Clouds

As the FY 2017 Annual Plan and Budget Proposal describes, some of the key components of the infrastructure and programs that comprise the National Cancer Program include: 69 NCI-designated Cancer Centers across the country, NCI’s National Clinical Trials Network, NCI Community Oncology Research Program, and the NCI-supported programs that are training today’s cancer research workforce and the workforce of the …

Continue reading »

Permanent link to this article: https://ncip.nci.nih.gov/blog/1817-2/

Older posts «