Tag Archive: Bioinformatics

Feb 13

Imaging: A Key Component of a Cancer Data Ecosystem

    By Edward Helton, Ph.D., Government Sponsor, CBIIT Clinical Imaging Program, Robert Nordstrom, Ph.D., Branch Chief, Imaging Guided Intervention Branch, and Eve Shalley, Program Manager, NCI CBIIT Cancer Informatics Branch Precision medicine has quickly moved to the forefront of clinical research and practice, and is particularly pertinent to cancer since cancer is a disease of the …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/imaging-key-component-cancer-data-ecosystem/

Nov 29

Precision Medicine Inspires HPC

By Eric Stahlberg, Ph.D., Director, High Performance Computing Initiative, Data Science and Information Technology Program, Frederick National Laboratory for Cancer Research (FNLCR) The recent weeks have been momentous as the high-performance computing (HPC) community embraced the challenge of precision medicine.  The theme of this year’s leading international supercomputing conference, SC16,  was “HPC Matters” and it …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/precision-medicine-inspires-hpc/

Jul 20

Cancer Data and Computation in the Cloud: One Path to Affordable Genomics Research

By Gad Getz, Ph.D., Broad Institute / MGH The cost of DNA sequencing has dropped more than one million-fold over the last decade, making it increasingly possible to discover the genetic basis of cancer and response to treatment. Three challenges, however, impede this goal: 1) Analysts lack the resources to download, store and compute on …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/cancer-data-computation-cloud-one-path-affordable-genomics-research/

May 06

Usable, Collaborative, Reproducible, and Extensible: Four Key Tenets of Cloud Computing

The Seven Bridges Cancer Genomics Cloud (CGC) is one of three pilot systems funded by the National Cancer Institute with the aim of co-localizing massive genomics datasets, like The Cancer Genomics Atlas (TCGA), alongside secure and scalable computational resources for analysis. TCGA comprises multidimensional matched tumor-normal data from over 11,000 patients and 33 cancer types. …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/usable-collaborative-reproducible-extensible-four-key-tenets-cloud-computing/

Mar 15

NCI Data Catalog: Your One-Stop List for NCI Data

If you aren’t aware of the NCI Data Catalog, you should check it out! The NCI Data Catalog is a consolidated listing of the publicly available data collections produced by NCI initiatives, including The Cancer Genome Atlas (TCGA), The Cancer Imaging Archive (TCIA) and Surveillance, Epidemiology, and End Results (SEER) database. The catalog has been …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/your-one-stop-list-for-nci-datasets/

Feb 29

Informatics Community Crucial to the Cancer Moonshot

There has been a lot of press in the past couple of months about the “Cancer Moonshot,” first mentioned by Vice President Joe Biden in October 2015, and gaining steam recently with the President’s State of the Union address and an initial recommendation of $1 billion of funding. The White House released a Fact Sheet …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/title-informatics-community-a-crucial-component-of-cancer-moonshot/

Feb 01

Cancer Research in the Cloud: The New Normal?

By Ilya Shmulevich, Ph.D., Institute for Systems for Biology   We have all been hearing about the benefits of cloud computing for a long time now. At the Institute for Systems Biology (ISB), we believe that 2016 is the year in which a cloud-based approach will truly become “the new normal” for cancer research.  The …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/cancer-research-in-the-cloud-the-new-normal/

May 12

NCIP Hub: A Platform for Scientific Collaboration, Resource Sharing, and Education

One of the major goals of the NCIP is to help facilitate open innovation and scientific collaboration in the cancer research and informatics community.  To that end, we have undertaken several projects, two of which were the focus of previous NCIP blog posts:  The Cancer Genomics Cloud Pilot, an initiative to democratize access to and …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/ncip-hub-platform-scientific-collaboration-resource-sharing-education/

May 02

Dr. George Komatsoulis, CBIIT Deputy Director, Leaving the NCI

To the Cancer Informatics Community, As you may know, Dr. George Komatsoulis, Deputy Director of the NCI Center for Biomedical Informatics and Information Technology (CBIIT), will be leaving the NCI on May 2, 2014 to join the National Center for Biotechnology Information (NCBI) at the National Library of Medicine, where he will be focusing on …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/dr-george-komatsoulis-cbiit-deputy-director-leaving-nci/

Sep 09

The Future of the Pathway Interaction Database (PID) — A Conversation with Dr. Daoud Meerzaman

The Pathway Interaction Database (PID) is a collection of biomolecular interactions and events involving signaling and regulatory pathways that have been curated from the peer-reviewed literature. Users are able to browse through biomolecular interactions, run computational analyses, or synthesize and combine interactions to establish novel pathways. Begun as a collaborative project between the National Cancer …

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Permanent link to this article: https://ncip.nci.nih.gov/blog/future-pathway-interaction-database-pid-conversation-dr-daoud-meerzaman/

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